acpguedes
Novice
Oct 18, 2011, 6:13 AM
Views: 2835
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Re: [acpguedes] [HELP] find results in list
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OK
the correct systesis is
/(mfe:\s+(\-?\d.*\.?\d.*?)\s+kcal\/mol)/
but still not solved the problem
What I want is this:
I have a list of results, including the results are separated by "------------------------------------ ---------------------------------------------"
a sample list is below
----------------------------------------------------------------
miRNA: hsa-miR-92b*
Hybrid:
mfe: -29.5 kcal/mol
position 29
target 5' U A A U C 3'
GCUG ACUGC UUCC UCCC
UGAC UGGCG AGGG AGGG
miRNA 3' G G C C A 5'
Miranda:
Position: 29
Query: 3' guGACGUGGCGCAGGGCAGGGa 5'
||| ||:|| |:|| ||||
Ref: 5' tgCTGAACTGCATTCCTTCCCc 3'
Energy: -24.110001 kCal/Mol
Rybrid vs miRanda: OK
----------------------------------------------------------------
miRNA: hsa-miR-4689
Hybrid:
mfe: -34.0 kcal/mol
position 3
target 5' U G ACCC U U 3'
GU CCCACCAUG UC UCCUCA
CG GGGUGGUAC AG AGGAGU
miRNA 3' C G U 5'
Miranda:
Position: 3
Query: 3' ccggGGGUGGUAC----A-GAGGAGUu 5'
||||||||| | :||||||
Ref: 5' tgtgCCCACCATGACCCTCTTCCTCAt 3'
Energy: -29.650000 kCal/Mol
Rybrid vs miRanda: OK
this list, for example, has 3 results.
dai, I want a script where he writes on a result by result output file
but each result will be written only if the value of "mfe: blablabla kcal / mol" is within a range.
example, if I set the range is between -28 and -30 it will write the output file so the second result, looks like this:
miRNA: hsa-miR-92b*
Hybrid:
mfe: -29.5 kcal/mol
position 29
target 5' U A A U C 3'
GCUG ACUGC UUCC UCCC
UGAC UGGCG AGGG AGGG
miRNA 3' G G C C A 5'
Miranda:
Position: 29
Query: 3' guGACGUGGCGCAGGGCAGGGa 5'
||| ||:|| |:|| ||||
Ref: 5' tgCTGAACTGCATTCCTTCCCc 3'
Energy: -24.110001 kCal/Mol
Rybrid vs miRanda: OK
* Note that this result only from the list the "mfe:" is between -28 and -30
I'm waiting some help
Thanks
(This post was edited by acpguedes on Oct 18, 2011, 6:14 AM)
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