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Home: Perl Programming Help: Intermediate: Re: [andreiareis] filter huge genbank file by organism : Edit Log



Chris Charley
User

Oct 23, 2012, 9:27 AM


Views: 6985
Re: [andreiareis] filter huge genbank file by organism

OK, I see where the word 'Equinodermata' is in your file.

What info do you want to get from this (after the Equinodermata word)?

Update: I am attaching a sample program I wrote to parse a file in 'genbank' format. I'm sure you can use the general structure to parse your file - even if its not exactly the same as the example I used.

Update 2: It might help to search BioPerl's group or ask your question there.


(This post was edited by Chris Charley on Oct 24, 2012, 7:22 AM)
Attachments: bio_seq.pl (1.56 KB)


Edit Log:
Post edited by Chris Charley (User) on Oct 23, 2012, 9:35 AM
Post edited by Chris Charley (User) on Oct 24, 2012, 7:22 AM


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