Home: Perl Programming Help: Regular Expressions:
Help with genome coordinate matching !!! Urgent



vinay.baranwal
New User

Dec 9, 2010, 5:37 AM


Views: 6549
Help with genome coordinate matching !!! Urgent

Dear Pearl Gurus,

I have following problem and need your attention immediately. Probably you people can help me.

I have two files where i have three columns with following information.

ID Start End

I have to match them and there are several conditions like
1. If a match from first fall in between start and end.
2. If a match from first fall before start.
3. If a match falls after end and closer to ID 1 or ID2 (it would be good if i get the numbers in difference.


I have tried to explain the problem using a diagram. Hope this will help in understanding the problem.


Reply this post urgently guys... Please please please
Attachments: Image.jpg (11.1 KB)


rovf
Veteran

Dec 13, 2010, 5:47 AM


Views: 6326
Re: [vinay.baranwal] Help with genome coordinate matching !!! Urgent

You don't explain, how your data looks like. I guess, ID is just a string, and start and end are integral numbers (indices)?