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Home: Need a Custom or Prewritten Perl Program?: I need a program that...:
Post deleted by derrick0285

 



derrick0285
Novice

Sep 22, 2011, 6:55 PM

Post #1 of 2 (5332 views)
Post deleted by derrick0285

 


derrick0285
Novice

Sep 23, 2011, 3:31 PM

Post #2 of 2 (5216 views)
Re: [derrick0285] every 4th line string counter? [In reply to] Can't Post

Here's my progress I've created a program the filters out the stuff that isnt needed so... now i have a file that looks like the stuff at the very end. now i just need a simple program that tells perl to read vertical lines instead of horizontal lines....(with this i can do the if statement)...or another means to sum numbers of C's and G's in columns. I'm thinking this is a quick fix, anyone?

CGAAATTTTCGATGATNGCGCATTTCTCCGNNNNNN
AGATGAGGTGCCAGCCNAAGAGGAGGAAATNNNNNN
AACACATCAACCACTCNAAGTGCCGTCAAGNNNNNN
CCCGTTTCCGTCATGGNCGACTTCTGCGACNNNNNN
CATTCGTACTGCGGCGACAGAGGTGAAATTCNNNNN
CATCGATTTCCAAAGGTTTGATACGGAAGGANNNNN
GAAAAAGAAGGCCAAAAAGAAGGCGGAGTTANNNNN
GTCGGATTCCCCTGGATCGTGCCAGTTCTGANNNNN
GTCTTGTCTGCCGGTTTGTCGCTGGCCGGCGNNNNN
GTGAACGCCATCAACCCCGATCCCAACGAACNNNNN

 
 


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