derrick0285
Novice
Sep 23, 2011, 3:31 PM
Post #2 of 2
(8624 views)
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Re: [derrick0285] every 4th line string counter?
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Here's my progress I've created a program the filters out the stuff that isnt needed so... now i have a file that looks like the stuff at the very end. now i just need a simple program that tells perl to read vertical lines instead of horizontal lines....(with this i can do the if statement)...or another means to sum numbers of C's and G's in columns. I'm thinking this is a quick fix, anyone?
CGAAATTTTCGATGATNGCGCATTTCTCCGNNNNNN
AGATGAGGTGCCAGCCNAAGAGGAGGAAATNNNNNN
AACACATCAACCACTCNAAGTGCCGTCAAGNNNNNN
CCCGTTTCCGTCATGGNCGACTTCTGCGACNNNNNN
CATTCGTACTGCGGCGACAGAGGTGAAATTCNNNNN
CATCGATTTCCAAAGGTTTGATACGGAAGGANNNNN
GAAAAAGAAGGCCAAAAAGAAGGCGGAGTTANNNNN
GTCGGATTCCCCTGGATCGTGCCAGTTCTGANNNNN
GTCTTGTCTGCCGGTTTGTCGCTGGCCGGCGNNNNN
GTGAACGCCATCAACCCCGATCCCAACGAACNNNNN
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